Creating AI Pipeline for Cell Image Analysis: Insights, Challenges, and CHO Use Case (Part 1 of 2, Intel Edge AI in the Realm of Biopharma and Drug Development)

Authors: Xiake Sun, Su Yang, Tianmeng Chen, Tong Qiu

openvino.genai/samples/cpp/rag_sample at openvino_genai_serving · sammysun0711/openvino.genai (github.com)

OpenVINO GenAI Server (OGS) Update:

-Update LLM: stream generation, reset handle, multi-round chat, model cache config

-Support VLM

-Support Reranker for RAG sample

-Support BLIP image embedding for photo search with DB

-Support C++ GUI with imgui for photo search

Now we scale the text embedding to image embedding for RAG sample and support multi-Vector Retriever for RAG.

1. Multi-Vector Retriever for RAG on text: QA over Document
2. Multi-Vector Retriever for RAG on image: Photo search with DB retrieval

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Here is a photo search sample with image embedding.

Usage 2: Photo Search with DB retrieval

Steps:

1.use python client to create image vector DB (PostgreSQL)

2.use GUI to search image

Here is a sample image to demonstrate GUI usage on client platform. we search the bus photo with top 10 similar images from the 100 images which are embedded into Vector DB.

Usage 3: Chat with images via MiniCPM-V

Once we have created a multimodal vector DB through image embedding, we can further communicate with the image through VLM.

We integrate the C++ GenAI sample visual_language_chat with openbmb/MiniCPM-V-2_6.

Here is the demo image on client platform.

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Authors: Tianmeng Chen, Xiake Sun

Introduction

Stable Diffusion is a generative artificial intelligence model that produces unique images from text and image prompts. ControlNet is a neural network that controls image generation in Stable Diffusion by adding extra conditions. The specific structure of Stable Diffusion + ControlNet is shown below:

In many cases, ControlNet is used in conjunction with other models or frameworks, such as OpenPose, Canny, Line Art, Depth, etc. An example of Stable Diffusion + ControlNet + OpenPose:

OpenPose identifies the key points of the human body from the left image to get the pose image, and then inputs the Pose image to ControlNet and Stable Diffusion to get the right image. In this way, ControlNet can control the generation of Stable Diffusion.

In this blog, we focus on enabling the stable diffusion pipeline with ControlNet in Optimum-intel. Some details can be found in this open PR.

How to enable StableDiffusionControlNet pipeline in Optimum-Intel

The important code is in optimum/intel/openvino/modelling_diffusion.py and optimum/exporters/openvino/model_configs.py. There is the diffusion pipeline related code in file modelling_diffusion.py, you can find several Class: OVStableDiffusionPipelineBase, OVStableDiffusionPipeline, OVStableDiffusionXLPipelineBase, OVStableDiffusionXLPipeline, and so on. What we need to do is mimic these base classes to add the OVStableDiffusionControlNetPipelineBase, StableDiffusionContrlNetPipelineMixin, and OVStableDiffusionControlNetPipeline. A few of the important parts are as follows:

_from_pretrained function in class OVStableDiffusionControlNetPipelineBase: initial whole pipeline from local or download.

_from_transformers function in class OVStableDiffusionControlNetPipelineBase: convert torch model to OpenVINO IR model.

_reshape_unet_controlnet and _reshape_controlnet in class OVStableDiffusionControlNetPipelineBase: reshape dynamic OpenVINO IR model to static in order to decrease cost.

__call__ function in class StableDiffusionContrlNetPipelineMixin: do the inference in the pipeline.

In model_configs.py, we define UNetControlNetOpenVINOConfig by inheriting UNetOnnxConfig, which includes UNetControlNet inputs and outputs.

By now we have completed the rough code, after which some very detailed code additions are needed, so I won't go into that here.

How to use StableDiffusionControlNet pipeline via Optimum-Intel

The next step is how to use the code, examples of which can be found in this repository.

Installation and update of environments and dependencies from source. Make sure your python version is greater that 3.10 and your optimum-intel and optimum version is up to date accounding to the requirements.txt.

# %python -m venv stable-diffusion-controlnet
# %source stable-diffusion-controlnet/bin/activate
%pip install -r requirements.txt

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At first, we should convert pytorch model to openvino IR with dynamic shape. Now import related packages.

from optimum.intel import OVStableDiffusionControlNetPipeline
import os
from diffusers import UniPCMultistepScheduler

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Set pytroch models of stable diffusion 1.5 and controlnet path if you have them in local, else you can run pipeline from download.

SD15_PYTORCH_MODEL_DIR="stable-diffusion-v1-5"
CONTROLNET_PYTORCH_MODEL_DIR="control_v11p_sd15_openpose"


if os.path.exists(SD15_PYTORCH_MODEL_DIR) and os.path.exists(CONTROLNET_PYTORCH_MODEL_DIR):
    scheduler = UniPCMultistepScheduler.from_config("scheduler_config.json")
    ov_pipe = OVStableDiffusionControlNetPipeline.from_pretrained(SD15_PYTORCH_MODEL_DIR, controlnet_model_id=CONTROLNET_PYTORCH_MODEL_DIR, compile=False, export=True, scheduler=scheduler,device="GPU.1")
    ov_pipe.save_pretrained(save_directory="./ov_models_dynamic")
    print("Dynamic model is saved in ./ov_models_dynamic")  

else:
    scheduler = UniPCMultistepScheduler.from_config("scheduler_config.json")
    ov_pipe = OVStableDiffusionControlNetPipeline.from_pretrained("runwayml/stable-diffusion-v1-5", controlnet_model_id="lllyasviel/control_v11p_sd15_openpose", compile=False, export=True, scheduler=scheduler, device="GPU.1")
    ov_pipe.save_pretrained(save_directory="./ov_models_dynamic")
    print("Dynamic model is saved in ./ov_models_dynamic")

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Now you will have openvino IR models file under **ov_models_dynamic ** folder.

from optimum.intel import OVStableDiffusionControlNetPipeline
from controlnet_aux import OpenposeDetector
from pathlib import Path
import numpy as np
import os
from PIL import Image
from diffusers import UniPCMultistepScheduler
import requests
import torch

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We recommand to use static shape model to decrease GPU memory cost. Set your STATIC_SHAPE and DEVICE_NAME.

NEED_STATIC = True
STATIC_SHAPE = [1024,1024]
DEVICE_NAME = "GPU.1"

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Load openvino model files, if is static, reshape dynamic models to fixed shape.

if NEED_STATIC:
    print("Using static models")
    scheduler = UniPCMultistepScheduler.from_config("scheduler_config.json")
    ov_config ={"CACHE_DIR": "", 'INFERENCE_PRECISION_HINT': 'f16'}
    if not os.path.exists("ov_models_static"):
        if os.path.exists("ov_models_dynamic"):
            print("load dynamic models from local ov files and reshape to static")
            ov_pipe = OVStableDiffusionControlNetPipeline.from_pretrained(Path("ov_models_dynamic"), scheduler=scheduler, device=DEVICE_NAME, compile=True, ov_config=ov_config, height=STATIC_SHAPE[0], width=STATIC_SHAPE[1])
            ov_pipe.reshape(batch_size=1 ,height=STATIC_SHAPE[0], width=STATIC_SHAPE[1], num_images_per_prompt=1)
            ov_pipe.save_pretrained(save_directory="./ov_models_static")
            print("Static model is saved in ./ov_models_static")  
        else:
            raise ValueError("No ov_models_dynamic exists, please trt ov_model_export.py first")
    else:
        print("load static models from local ov files")
        ov_pipe = OVStableDiffusionControlNetPipeline.from_pretrained(Path("ov_models_static"), scheduler=scheduler, device=DEVICE_NAME, compile=True, ov_config=ov_config, height=STATIC_SHAPE[0], width=STATIC_SHAPE[1])
else:
    scheduler = UniPCMultistepScheduler.from_config("scheduler_config.json")
    ov_config ={"CACHE_DIR": "", 'INFERENCE_PRECISION_HINT': 'f16'}
    print("load dynamic models from local ov files")
    ov_pipe = OVStableDiffusionControlNetPipeline.from_pretrained(Path("ov_models_dynamic"), scheduler=scheduler, device=DEVICE_NAME, compile=True, ov_config=ov_config)
     

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Set seed for Numpy and torch to make result reproducible.

seed = 42
torch.manual_seed(seed)           
torch.cuda.manual_seed(seed)       
torch.cuda.manual_seed_all(seed)
np.random.seed(seed)

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Load image for ControlNet, or you can use your own image, or generate image with OpenPose OpenVINO model, notice that OpenPose model is not supported by OVStableDiffusionControlNetPipeline yet, so you need to convert it to openvino model first manually. Here we use directly the result from OpenPose:

pose = Image.open(Path("pose_1024.png"))

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Set prompt, negative_prompt, image inputs.

prompt = "Dancing Darth Vader, best quality, extremely detailed"
negative_prompt = "monochrome, lowres, bad anatomy, worst quality, low quality"

result = ov_pipe(prompt=prompt, image=pose, num_inference_steps=20, negative_prompt=negative_prompt, height=STATIC_SHAPE[0], width=STATIC_SHAPE[1])

result[0].save("result_1024.png")

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Authors: Hongbo Zhao, Fiona Zhao

Introduction

InternVL2.0 is a series of multimodal large language models available in various sizes. The InternVL2-4B model comprises InternViT-300M-448px, an MLP projector, and Phi-3-mini-128k-instruct. It delivers competitive performance comparable to proprietary commercial models across a range of capabilities, including document and chart comprehension, infographics question answering, scene text understanding and OCR tasks, scientific and mathematical problem solving, as well as cultural understanding and integrated multimodal functionalities.

You can find more information on github repository: https://github.com/zhaohb/InternVL2-4B-OV 

OpenVINO^TM backend on InternVL2-4B

Step 1: Install system dependency and setup environment

Create and enable python virtual environment

conda create -n ov_py310 python=3.10 -y
conda activate ov_py310

Clone the InternVL2-4B-OV repository from github

git clonehttps://github.com/zhaohb/InternVL2-4B-OV
cd InternVL2-4B-OV

 Install python dependency

pip install -r requirement.txt
pip install --pre -U openvino openvino-tokenizers --extra-index-url https://storage.openvinotoolkit.org/simple/wheels/nightly

 Step2: Get HuggingFace model

huggingface-cli download --resume-download OpenGVLab/InternVL2-4B --local-dir InternVL2-4B--local-dir-use-symlinks False
cp modeling_phi3.py  InternVL2-4B/modeling_phi3.py
cp modeling_intern_vit.py   InternVL2-4B/modeling_intern_vit.py

 Step 3: Export to OpenVINO™ model

python test_ov_internvl2.py -m ./InternVL2-4B -ov ./internvl2_ov_model -llm_int4_com -vision_int8 -llm_int8_quan -convert_model_only

 Step4: Simple inference test with OpenVINO™

python test_ov_internvl2.py -m ./InternVL2-4B -ov ./internvl2_ov_model -llm_int4_com -vision_int8-llm_int8_quan

 Question: Please describe the image shortly.

Answer:

The image features a close-up view of a red panda resting on a wooden platform. The panda is characterized by its distinctive red fur, white face, and ears. The background shows a natural setting with green foliage and a wooden structure.

Here are the parameters with descriptions:

python test_ov_internvl2.py --help
usage: Export InternVL2 Model to IR [-h] [-m MODEL_ID] -ov OV_IR_DIR [-d DEVICE] [-pic PICTURE] [-p PROMPT] [-max MAX_NEW_TOKENS] [-llm_int4_com] [-vision_int8] [-llm_int8_quant] [-convert_model_only]
options:
  -h, --help   show this help message and exit  
  -m MODEL_ID, --model_id MODEL_ID   model_id or directory for loading     
  -ov OV_IR_DIR, --ov_ir_dir OV_IR_DIR     output directory for saving model  
  -d DEVICE, --device DEVICE   inference device  
  -pic PICTURE, --picture PICTURE  picture file 
  -p PROMPT, --prompt PROMPT    prompt  
  -max MAX_NEW_TOKENS, --max_new_tokens MAX_NEW_TOKENS    max_new_tokens  
  -llm_int4_com, --llm_int4_compress  llm int4 weight scompress  
  -vision_int8, --vision_int8_quant  vision int8 weights quantize  
  -llm_int8_quant, --llm_int8_quant      llm int8 weights dynamic quantize  
  -convert_model_only, --convert_model_only      convert model to ov only, do not do inference test

Supported optimizations

1. Vision model INT8 quantization and SDPA optimization enabled

2. LLM model INT4 compression

3. LLM model INT8 dynamic quantization

4. LLM model with SDPA optimization enabled

Summary

This blog introduces how to use the OpenVINO™ python API to run the pipeline of the Internvl2-4B model, and uses a variety of acceleration methods to improve the inference speed.

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